p4ward.run.protein_filter

p4ward.run.protein_filter.crl_filters(receptor_obj, ligase_obj, crl_model_clash, clash_threshold, clash_count_tol, accessible_lysines, lysine_count, lys_sasa_cutoff, overlap_dist_cutoff, vhl_ubq_dist_cutoff, crbn_ubq_dist_cutoff, e3, num_procs, pose_objs=None)

p4ward.run.protein_filter.ligand_distances(receptor_obj, ligase_obj, protac_objs)

Use Biopython to filter the megadock poses which satisfy a distance cutoff for both binding sites. Takes the a Protein object and handles the rest by accessing its attributes.