p4ward.benchmark.capri

p4ward.benchmark.capri.benchmark(protac_objs, receptor_obj, ligase_obj, ref_ligase_file)

p4ward.benchmark.capri.calc_fnat(receptor_struct, ref_ligase_struct, pose_struct)

p4ward.benchmark.capri.calc_irms(receptor_struct, ref_ligase_struct, ligase_obj, pose_obj)

p4ward.benchmark.capri.calc_lrms(receptor_struct, ref_ligase_struct, pose_struct)

p4ward.benchmark.capri.calc_rank(fnat, lrms, irms)

p4ward.benchmark.capri.get_atom_pairs(interface_struct, search_struct, cutoff=5.0)

p4ward.benchmark.capri.get_interface(interface_struct, search_struct, cutoff=5.0)

p4ward.benchmark.capri.make_structure(*lists_of_residues, structure_name='structure')